mooneygroup.org

Project Information:

Time Frame:	2010 - Present
Link:	mooneygroup.org
Languages:	php, mysql, jquery, xml, cytoscape, json, drupal
Project Roles:	Lead Programmer, Web Master
Description:	This website was created to hold any and all web-tools (widgets) that the Mooney Lab makes. It is written in drupal and has custom programs that use php, mysql, javascript, jquery, cytoscape, xml and json to send information to and from the user in a secure way.

Project Screenshots:

Special Features

Mooneygourp.org is essentially a wrapper and stepping stone to web tools created in Sean Mooney's lab. The Bioinformatics tools that we create in the Mooney Lab generally have an area for user's to input lists of genes that they might be studying and a results page. In the background we take those lists and a pipeline of scripts will annotate, cluster, derive statistics, or just display aggregated information about the user's list. We utilize many open source and third party APIs to display our information in graphs and formats in which scientists are accustomed.

Statistical Tracking of Ontological Phrases STOP is a multi-ontology enrichment analysis tool. It is intended to be used to help from hypothesis about large sets of genes or proteins. The annoations used for enrichment analysis are obtained automatically applying text descriptions of genes and proteins to the NCBO annotator. Text for genes is found using NCBI entrez gene, and text for proteins is found using UniProt. The text is then run though NCBO annotator with all the available ontologies.

Discrete Enrichment of Functionally Organized Genes DEFOG (Discrete Enrichment of functionally organized genes) is a web-based tool designed to facilitate the discovery of related groups of functional concepts from gene lists.

Navigation